DATASETS
Explore these publicly available datasets generated with PacBio sequencing.
Whole genome sequencing
Application | Dataset | Download literature | Technology | Sequencing system |
---|---|---|---|---|
Variant detection, assembly, epigenetics | Homo sapiens — GIAB trio HG002-4 | Application note | HiFi long read | Revio system |
Tumor/normal | COLO829 melanoma | Application note | HiFi long read | Revio system |
Tumor/normal | HCC1395 | Application note | HiFi long read | Revio system |
Whole genome sequencing | Various plant & animals – mouse, ladybug, oak, mistletoe, and maize | Plant + animal biology | HiFi long read | Revio system |
Whole genome sequencing | Homo sapiens - GIAB trio HG002-4 | Application brief | SBB short read | Onso system |
Assembly (ultra-low DNA input) | Phlebotomus papatasi, Homo sapiens, Drosophila melanogaster | Considerations for using ultra-low DNA input workflows for WGS | HiFi long read | Sequel II system |
Assembly | Food safety & infectious microbes – 96 plex | Microbial WGS | HiFi long read | Sequel IIe system |
Targeted sequencing
RNA sequencing
Application | Dataset | Download literature | Technology | Sequencing system |
---|---|---|---|---|
Kinnex single-cell | Homo sapiens - PBMC 10x Chromium Single Cell (5' and 3' libraries) | Kinnex single-cell application note | HiFi long-read | Sequel II and Revio systems |
Kinnex single-cell | Homo sapiens - HG002 (10x 5') | Kinnex single-cell RNA application note | HiFi long-read | Revio system |
Kinnex full-length RNA | Homo sapiens – UHRR | Kinnex full-length RNA application note | HiFi long-read | Sequel II and Revio systems |
Kinnex full-length RNA | Homo sapiens – HG002 | Kinnex full-length RNA application note | HiFi long-read | Revio system |
Kinnex full-length RNA | Homo sapiens - Heart | Kinnex full-length RNA application note | HiFi long-read | Revio system |
Kinnex full-length RNA | Homo sapiens - Cerebellum | Kinnex full-length RNA application note | HiFi long-read | Revio system |
Metagenomics
Gene therapy vectors
Application | Dataset | Download literature | Technology | Sequencing system |
---|---|---|---|---|
AAV | scAAV 8-plex – Vector Biolabs rh10-CBA-eGFP | AAV sequencing with HiFi reads | HiFi long read | Sequel II system |
AAV | ssAAV – ViGene pAV-CMF-GFP | AAV sequencing with HiFi reads | HiFi long read | Sequel II system |
AAV | ssAAV-scAAV 1:10 mixture | AAV sequencing with HiFi reads | HiFi long read | Sequel II system |
COVID-19 sequencing
Application | Dataset | Data type | PacBio system |
---|---|---|---|
SARS-CoV-2 surveillance | Omicron Samples | HiFi reads | Sequel II system |
SARS-CoV-2 surveillance | Synthetic RNA controls | HiFi reads | Sequel II system |
SARS-CoV-2 surveillance | Surveillance samples | HiFi reads | Sequel II system |
File formats
Dataset | Data type | PacBio system |
---|---|---|
8 SMRT Cell run directory | Directory | Revio system |
reads.bam and hifi_reads.bam | HiFi reads | Sequel IIe system |
reads.bam and hifi_reads.bam with kinetic information | HiFi reads | Sequel IIe system |